ECTRIMS eLearning

Defining a robust disease severity phenotype for use in genetic association studies
Author(s): ,
V.G Jokubaitis
Affiliations:
Department of Medicine (RMH), University of Melbourne;Deparment of Neurology, Royal Melbourne Hospital, Parkville, VIC, Australia
,
T Kalincik
Affiliations:
Department of Medicine (RMH), University of Melbourne;Deparment of Neurology, Royal Melbourne Hospital, Parkville, VIC, Australia
,
D Horakova
Affiliations:
Department of Neurology and Center for Clinical Neuroscience, Charles University in Prague, 1st Faculty of Medicine and General University Hospital in Prague, Prague, Czech Republic
,
E Havrdova
Affiliations:
Department of Neurology and Center for Clinical Neuroscience, Charles University in Prague, 1st Faculty of Medicine and General University Hospital in Prague, Prague, Czech Republic
,
P Kleinova
Affiliations:
Department of Neurology and Center for Clinical Neuroscience, Charles University in Prague, 1st Faculty of Medicine and General University Hospital in Prague, Prague, Czech Republic
,
K Kucerova
Affiliations:
Department of Neurology and Center for Clinical Neuroscience, Charles University in Prague, 1st Faculty of Medicine and General University Hospital in Prague, Prague, Czech Republic
,
G Izquierdo
Affiliations:
Hospital Universitario Virgen Macarena, Sevilla
,
F Matesanz
Affiliations:
Instituto de Parasitologia y Biomedicina Lopez Neyra, CSIC, Grenada, Spain
,
A Lugaresi
Affiliations:
DIBINEM, Universita di Bologna;IRCCS Istituto delle Scienze Neurologiche di Bologna, Bologna, Italy
,
T.J Kilpatrick
Affiliations:
Deparment of Neurology, Royal Melbourne Hospital, Parkville, VIC, Australia;Melbourne Neuroscience Institute, University of Melbourne, Parkville, VIC
,
J Lechner-Scott
Affiliations:
Department of Neurology, John Hunter Hospital;Department of Medicine (RMH), University of Melbourne0
,
M Slee
Affiliations:
Department of Medicine (RMH), University of MelbourneDepartment of Medicine (RMH), University of Melbourne
,
M Barnett
Affiliations:
Department of Medicine (RMH), University of MelbourneDeparment of Neurology, Royal Melbourne Hospital, Parkville, VIC, Australia
,
S Vucic
Affiliations:
Department of Medicine (RMH), University of MelbourneDepartment of Neurology and Center for Clinical Neuroscience, Charles University in Prague, 1st Faculty of Medicine and General University Hospital in Prague, Prague, Czech Republic
,
D Booth
Affiliations:
Department of Medicine (RMH), University of MelbourneDepartment of Neurology and Center for Clinical Neuroscience, Charles University in Prague, 1st Faculty of Medicine and General University Hospital in Prague, Prague, Czech Republic
,
A Manouchehrinia
Affiliations:
Department of Medicine (RMH), University of MelbourneHospital Universitario Virgen Macarena, Sevilla
,
B Taylor
Affiliations:
Department of Medicine (RMH), University of MelbourneInstituto de Parasitologia y Biomedicina Lopez Neyra, CSIC, Grenada, Spain
,
J Hillert
Affiliations:
Department of Medicine (RMH), University of MelbourneHospital Universitario Virgen Macarena, Sevilla
,
P de Jager
Affiliations:
Department of Medicine (RMH), University of MelbourneDIBINEM, Universita di Bologna
H Butzkueven
Affiliations:
Department of Medicine (RMH), University of Melbourne;Deparment of Neurology, Royal Melbourne Hospital, Parkville, VIC, Australia;Department of Medicine (RMH), University of MelbourneIRCCS Istituto delle Scienze Neurologiche di Bologna, Bologna, Italy
ECTRIMS Learn. Jokubaitis V. 09/15/16; 146251; P411
Vilija G. Jokubaitis
Vilija G. Jokubaitis
Contributions
Abstract

Abstract: P411

Type: Poster

Abstract Category: Pathology and pathogenesis of MS - Genetics /Epigenetics and Pharmacogenetics

Background: To-date efforts to identify genetic associations with MS phenotype have been largely unrewarding. One possible explanation for this is that past genotype-phenotype association studies have relied on cross-sectional definitions of disease severity.

Objective: To define a robust relapse-onset MS (RMS) disease severity phenotype based on longitudinally acquired outcomes data for use in genetic association studies.

Methods: Using data obtained from MSBase, we identified all RMS patients from collaborating centres with minimum disease duration of 5 years, 5 years minimum prospective follow-up, and minimum 3 EDSS scores recorded in the absence of a relapse. Collaborating physicians nominated mild and severe RMS patients from their centres that served to define cut-offs for phenotypic outcomes of interest. Area under the EDSS-time curve was calculated for each individual and adjusted for follow-up. Using pre-defined EDSS-time cut-offs we created an algorithm that identified patients at the clinician-defined extremes of RMS outcome. Our algorithm was relapse, MRI and treatment agnostic. We validated algorithm calls by assessment of median MSSS over the entire observation period.

Results: We identified 5,075 individuals meeting minimum inclusion criteria. Median cohort follow-up in MSBase was 8.8 years (interquartile range (IQR): 6.7y, 12.5y), with a median 16 (IQR: 9, 27) EDSS scores available for assessment. Median symptom duration at most recent visit was 15.2 years, and median MSSS over the entire observation period was 3.49 (IQR: 2.06, 5.51). The mild RMS cohort as selected by our algorithm (25.9% of the total population) had a median symptom duration of 11.6 years (IQR: 8.2, 16.5), 14 EDSS scores assessed (IQR: 8,25), and a median observation follow-up MSSS of 1.50 (IQR: 0.88, 2.25). The severe RMS cohort constituted 18.4% of the total population. Severe RMS cohort characteristics included: median symptom duration of 19.0 years (IQR: 13.5, 25.9), 15 EDSS scores assessed (IQR: 9, 24), and a median observation follow-up MSSS of 7.21 (6.15, 8.27).

Conclusion: We have successfully defined a robust RMS phenotype using longitudinal, prospectively acquired clinical outcomes data validated against the MSSS. We are now actively recruiting patients identified using this definition of disease severity to perform a de novo genome-wide association study aiming to identify markers of relapse-onset MS severity.

Disclosure: This study is supported by grants from The Royal Melbourne Hospital [MH2013-055]; The MSBase Foundation; CharityWorks for MS/MS Research Australia [MSRA12-062], and an NHMRC Centre for Research Excellence Grant [Grant ID 1001216]. The MSBase Foundation is an independent not for profit organisation which receives support in the form of grants from the National Health and Medical Research Council (NHMRC) Australia, Merck, Merck Serono, Biogen, Novartis, and Genzyme a Sanofi company.



The Authors report no disclosures with regards to this study.

VGJ: Nothing to disclose; TK: Nothing to disclose; DH: Nothing to disclose; EH: Nothing to disclose; PK: Nothing to disclose; KK: Nothing to disclose; GI: Nothing to disclose; FM: Nothing to disclose; AL: Nothing to disclose; TJK: Nothing to disclose; JLS: Nothing to disclose; MS: Nothing to disclose; SV: Nothing to disclose; DB: Nothing to disclose; AM: Nothing to disclose; BT: Nothing to disclose; JH: Nothing to disclose; PDJ: Nothing to disclose; HB Nothing to disclose.

Abstract: P411

Type: Poster

Abstract Category: Pathology and pathogenesis of MS - Genetics /Epigenetics and Pharmacogenetics

Background: To-date efforts to identify genetic associations with MS phenotype have been largely unrewarding. One possible explanation for this is that past genotype-phenotype association studies have relied on cross-sectional definitions of disease severity.

Objective: To define a robust relapse-onset MS (RMS) disease severity phenotype based on longitudinally acquired outcomes data for use in genetic association studies.

Methods: Using data obtained from MSBase, we identified all RMS patients from collaborating centres with minimum disease duration of 5 years, 5 years minimum prospective follow-up, and minimum 3 EDSS scores recorded in the absence of a relapse. Collaborating physicians nominated mild and severe RMS patients from their centres that served to define cut-offs for phenotypic outcomes of interest. Area under the EDSS-time curve was calculated for each individual and adjusted for follow-up. Using pre-defined EDSS-time cut-offs we created an algorithm that identified patients at the clinician-defined extremes of RMS outcome. Our algorithm was relapse, MRI and treatment agnostic. We validated algorithm calls by assessment of median MSSS over the entire observation period.

Results: We identified 5,075 individuals meeting minimum inclusion criteria. Median cohort follow-up in MSBase was 8.8 years (interquartile range (IQR): 6.7y, 12.5y), with a median 16 (IQR: 9, 27) EDSS scores available for assessment. Median symptom duration at most recent visit was 15.2 years, and median MSSS over the entire observation period was 3.49 (IQR: 2.06, 5.51). The mild RMS cohort as selected by our algorithm (25.9% of the total population) had a median symptom duration of 11.6 years (IQR: 8.2, 16.5), 14 EDSS scores assessed (IQR: 8,25), and a median observation follow-up MSSS of 1.50 (IQR: 0.88, 2.25). The severe RMS cohort constituted 18.4% of the total population. Severe RMS cohort characteristics included: median symptom duration of 19.0 years (IQR: 13.5, 25.9), 15 EDSS scores assessed (IQR: 9, 24), and a median observation follow-up MSSS of 7.21 (6.15, 8.27).

Conclusion: We have successfully defined a robust RMS phenotype using longitudinal, prospectively acquired clinical outcomes data validated against the MSSS. We are now actively recruiting patients identified using this definition of disease severity to perform a de novo genome-wide association study aiming to identify markers of relapse-onset MS severity.

Disclosure: This study is supported by grants from The Royal Melbourne Hospital [MH2013-055]; The MSBase Foundation; CharityWorks for MS/MS Research Australia [MSRA12-062], and an NHMRC Centre for Research Excellence Grant [Grant ID 1001216]. The MSBase Foundation is an independent not for profit organisation which receives support in the form of grants from the National Health and Medical Research Council (NHMRC) Australia, Merck, Merck Serono, Biogen, Novartis, and Genzyme a Sanofi company.



The Authors report no disclosures with regards to this study.

VGJ: Nothing to disclose; TK: Nothing to disclose; DH: Nothing to disclose; EH: Nothing to disclose; PK: Nothing to disclose; KK: Nothing to disclose; GI: Nothing to disclose; FM: Nothing to disclose; AL: Nothing to disclose; TJK: Nothing to disclose; JLS: Nothing to disclose; MS: Nothing to disclose; SV: Nothing to disclose; DB: Nothing to disclose; AM: Nothing to disclose; BT: Nothing to disclose; JH: Nothing to disclose; PDJ: Nothing to disclose; HB Nothing to disclose.

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